The contribution of genetics in the study of the sea-bob shrimp populations from the brazilian coast
Keywords:
Xiphopenaeus kroyeri, Xiphopenaeus riveti, cryptic species, molecular systematics, geometric morphometrics, fisheries geneticsAbstract
Genetic studies can provide several important informations for a sustainable fisheries management, mainly for the identification of different genetic stocks. In Brazil, genetic studies of the sea-bob shrimp, Xiphopenaeus kroyeri, produced important new information on the systematics of the genus, demonstrating the presence of anonymous cryptic species and outlining their geographical distribution and the levels of genetic diversity and population structuring of Brazilian species. Allozymes and sequence polymorphisms of the mitochondrial COI gene have also been used to beget diagnosis systems for the correct species identification. Recently, geometric morphometrics emerged as a powerful methodology for identifying operational taxonomic units, confirming genetic data with great similarity of results, and representing a promising tool to assist the identification of fishery stocks. Geometric morphometrics analyses were used to characterize Xiphopenaeus samples from Brazil, showing significant differences among populations, confirming previous patterns revealed by molecular data. This study gathers the information produced so far about the molecular systematics, patterns of geographic distribution of the cryptic Xiphopenaeus species, genetic and morphometric characterizations of variability and delineation of population boundaries. It intends to determine distribution and structuring consensus patterns of the genetic variability, aiming to support management and conservation actions as well as to identify gaps of knowledge and direct future efforts in order to address them.
References
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ANTONOVICS, J. 1990 Genetically based measures of uniqueness. In: ORIANS, G.H.; BROWN, G.M.; KUNIN, W.E.; SWIERZBINSKI, J.E. The Preservation and Valuation of Biological Resources. Seattle: University of Washington Press. 314p.
BENZIE, J.A.H. 2000 Population genetic structure in penaeid prawns. Aquaculture Research, 31: 95í 119.
BOOKSTEIN, F.L. 1991 Morphometric tools for landmark data. Cambridge: Cambridge University Press. 460p.
BOUVIER E.L. 1907 Crustaces Decapodes nouveaux recueillis a Paita (Peru) par M. le Dr. Rivet. Bulletin du Museum D'Histoire Naturelle, Paris, 13:113-116.
BREWER, G.J. 1970 An Introduction to Isozyme Techniques. New York: Academic Press. 186p.
CARVALHO, G.R. and HAUSER, L. 1994 Molecular genetics and the stock concept in fisheries.Reviews in Fish Biology and Fisheries, 4: 326í 350.
CHIARI, Y.; HYSENI, C.; FRITTS, F.T.; GLABERMAN, S.; MARQUEZ, C.; GIBBS, J.
2009 Morphometrics parallel genetics in a newly discovered and endangered taxon of Galápagos tortoise. PLoS ONE, 4(7): e6272.doi:10.1371/journal.pone.0006272.
CHUNG, M.Y. and CHUNG, M.G. 2012 A review of the use of genetic markers in orchid systematics with emphasis on allozymes. Biochemical Systematics and Ecology, 41: 62í 73
CRAWLEY, M.J. 2007 The R Book. West Sussex: Wiley& Sons. 942p.
DALL, W.; HILL, B.J.; ROTHLISBERG, P.C.;STAPLES, D.J. 1990 The biology of the penaeidae. Advances in Marine Biology, 27. London:Academic Press. 489p.
DUMONT, L.F.C.; HWANG, G.L.; MACLEAN, N.2009 The mtDNA control region of the barbaruça shrimp Artemesia longinaris (Decapoda:Penaeidae) and its potential use as a marker for population analysis. Atlí¢ntica, 31(2): 199-207.
FRANCISCO A.K. 2009 Caracterização genética populacional do camarão marinho Xiphopenaeus kroyeri no litoral sudeste-sul do Brasil. São Carlos. 100p. (Dissertação de mestrado. Universidade Federal de São Carlos). Available at:
http://www.ppggev.ufscar.br/downloads/teses-e-dissertacoes/
FRANCISCO A.K.; PINHEIRO, A.P.; SILVA, T.B.;GALETTI, P.M. 2009 Isolation and
characterization of microsatellites in three overexploited penaeid shrimp species along the Brazilian coastline. Conservation Genetics, 10:563í 566.
FRANCOY, T.M. and FONSECA, V.L.I. 2010 A morfometria geométrica de asas e a identificação automática das espécies de abelhas. Oecologia Australis, 14(1): 317-321.
FREITAS, P.D.; JESUS, C.M.; GALETTI, P.M. 2007 Isolation and characterization of new
microsatellite loci in the Pacific white shrimp Litopenaeus vannamei and cross-species amplification in other penaeid species. Molecular Ecology Notes, 7: 324í 326.
GUSMÃO, J. and SOLÉ-CAVA, A.M. 2002 Um sistema de diagnóstico molecular para a
identificação de espécies comerciais de camarões marinhos brasileiros. In: PRIMER CONGRESO IBEROAMERICANO VIRTUAL DEACUICULTURA. (http://www.civa2002.org).Zaragosa, pp. 754-764.
GUSMÃO, J.; LAZOSKI, C.; SOLÉ-CAVA, A.M.2000 A new species of Penaeus (Crustacea:
Penaeidae) revealed by allozyme and cytochrome oxidase I analyses. Marine Biology,
137: 435-446.
GUSMÃO, J.; LAZOSKI, C.; SOLÉ-CAVA, A.M. 2005 Population genetic structure of Brazilian shrimp species (Farfantepenaeus sp., F. brasiliensis, F.paulensis and Litopenaeus schmitti: Decapoda:Penaeidae). Genetics and Molecular Biology, 28:
165-171.
GUSMÃO, J.; LAZOSKI, C.; MONTEIRO, F.; SOLÉCAVA, A.M. 2006 Cryptic species and
population structuring of the Atlantic and Pacific seabob shrimp species, Xiphopenaeus kroyeri and X. riveti. Marine Biology, 149: 491í 502.
HUNTER R.; WEBB M.S.; ILIFFE, T.M.; BREMER, J.R.A. 2008 Phylogeny and historical
biogeography of the cave-adapted shrimp genus Typhlatya (Atyidae) in the Caribbean Sea and western Atlantic. Journal of Biogeography, 35: 65í 75.
KAPUSCINSKI, A.R. and MILLER, L.M. 2007 Genetic Guidelines for Fisheries Management. Duluth:Minnesota Sea Grant. 116p.
KIMURA, M. 1980 A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences.Journal of Molecular Evolution, 16: 111-120.
LAVERY, S.; CHAN, T.Y.; TAM, Y.K.; CHU, K.H.2004 Phylogenetic relationships and
evolutionary history of the shrimp genus Penaeus s.l. derived from mitochondrial DNA. Molecular Phylogenetics and Evolution, 31: 39-49.
MADERBACHER, M.; BAUER, C.; HERLER, J.; POSTL, L.; MAKASA, L.; STURMBAUER, C.
2008 Assessment of traditional versus geometric morphometrics for discriminating populations of the Tropheus moorii species complex (Teleostei:Cichlidae), a Lake Tanganyika model for allopatric speciation. Journal of Zoological Systematics and Evolutionary Research, 46: 153í 161.
MAGGIONI, D.E. 1996 Caracterização de algumas espécies do gênero Penaeus do litoral brasileiro através de eletroenfoque. Nauplius, 4: 129-137.
MAGGIONI, R.; ROGERS, A.D.; MACLEAN N.;D'INCAO F. 2001 Molecular phylogeny of
western Atlantic Farfantepenaeus and Litopenaeus shrimp based on mitochondrial 16S partial sequences. Molecular Phylogenetics and Evolution,18: 66-73.
MEIRMANS, P.G. and HEDRICK, P.W. 2011 Assessing population structure: FST and related measures. Molecular Ecology Resources, 11: 5í 18.
MURPHY, R.W.; SITES, J.W.; BUTH, D.G.; HAUFLER, C.H. 1990 Proteins I: isozyme
electrophoresis. In: HILLIS, D.M. and MORITZ, C. Molecular systematics. Sunderland: Sinauer Assoc. p. 45-126.
MUSTAFA, S. 1999 Genetics in sustainable fisheries management. Malden: Blackwell Science. 240p.
NAHAVANDI, R.; HAFEZAMINI, P.; MOEINI, H.;JAHROMI, M.Z.; SHAMSUDIN, M.N. 2011
Population of bottleneck and microsatellite: An Analysis Based on genetic diversity of Wild Tiger Shrimp Penaeus monodon (Fabricius) in Malaysia. African Journal of Biotechnology, 10(74):16715-16719.
OVENDEN, J.R. 1990 Mitochondrial DNA and marine stock assessment: a review. Australian Journal of Marine and Freshwater Research, 41: 835-853.
PÉREZ-FARFANTE, I. and KENSLEY, B.F. 1997 Penaeoid and Sergestoid shrimps and prawns of the world. Keys and diagnoses for the families and genera. Memoirs du Museum d'Histoire Naturelle, 175: 1-233.
QUAN, J.; ZHUANG, Z.; DENG, J.; DAI, J. 2004 Phylogenetic relationships of 12 Penaeoidea shrimp species deduced from mitochondrial DNA sequences. Biochemical Genetics, 42: 331-345.
ROHLF, F.J. and MARCUS, L.F. 1993 A revolution in morphometrics. Trends in Ecology and Evolution,8: 129-132.
RUMPUNEN, K. and BARTISH, I.V. 2002 Comparison of differentiation estimates based on morphometric and molecular data, exemplified by various leaf shape descriptors and RAPDs in the genus Chenomeles (Rosaceae). Taxon, 51(1): 69-82.
SANTOS, M.C.F. and IVO, C.T.C. 2000 Pesca,biologia e diní¢mica populacional do camarão Xiphopenaeus kroyeri (Heller,1862) (Crustacea, Decapoda, Penaeidae) capturado em frente ao município de Caravelas (Bahia-Brasil).BoletimTécnico CEPENE, 8: 131-164.
SCHLí–TTERER, C. 2004 The evolution of molecular markers - just a matter of fashion? Nature Reviews/Genetics, 5: 63-69.
SHAW, C.R. and PRASAD, R. 1970 Starch gel electrophoresis of enzymes - A compilation of recipes. Biochemical Genetics, 4(2): 297-320.
SILVA, D.M.; CRUZ, A.D.; BASTOS, R.P.; TELLES,M.P.C.; DINIZ-FILHO, J.A.F. 2008
Morphometric and genetic differentiation among populations of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from central Brazil. Iheringia, série Zoologia, 98(4): 493-500.
SMITH, S.I. 1869 Notice of the Crustacea collected by prof. C.F.Hartt on the coast of Brazil in 1867. Transactions of the Connecticut Academy of Arts and Science, 2(1): 1-41.
SPREITZER, M.L.; MAUTNER, S.; MAKASA, L.; STURMBAUER,C. 2012 Genetic and
Morphological population differentiation in the rock-dwelling and specialized shrimp-feeding cichlid fish species Altolamprologus compressiceps from Lake Tanganyika, East Africa. Hydrobiologia, 682: 143í 154.
THORPE, J.P.; SOLÉ-CAVA, A.M.; WATTS, P.C. 2000 Exploited marine invertebrates: genetics and fisheries. Hydrobiologia, 420(1): 165-184.
VOLOCH, C.M. and SOLÉ-CAVA, A.M. 2005 Genetic structure of the sea-bob shrimp
(Xiphopenaeus kroyeri Heller, 1862; Decapoda, Penaeidae) along the Brazilian southeastern coast. Genetics and Molecular Biology, São Paulo,28(2): 254-257.
WARD, R.D. 2000 Genetics in fisheries management. Hydrobiologia, 420(1): 191-201.
WEBER, L.; CONCEIÇÃO, M.L.; RUFFINO, M.L.;LEVY, J.A 1993 Population genetics of the shrimp Artemesia longinaris (Crustacea, Penaeidae) on the south-west Atlantic coast. Comparative Biochemistry and Physiology, 106(4): 1015-1020.
ANTONOVICS, J. 1990 Genetically based measures of uniqueness. In: ORIANS, G.H.; BROWN, G.M.; KUNIN, W.E.; SWIERZBINSKI, J.E. The Preservation and Valuation of Biological Resources. Seattle: University of Washington Press. 314p.
BENZIE, J.A.H. 2000 Population genetic structure in penaeid prawns. Aquaculture Research, 31: 95í 119.
BOOKSTEIN, F.L. 1991 Morphometric tools for landmark data. Cambridge: Cambridge University Press. 460p.
BOUVIER E.L. 1907 Crustaces Decapodes nouveaux recueillis a Paita (Peru) par M. le Dr. Rivet. Bulletin du Museum D'Histoire Naturelle, Paris, 13:113-116.
BREWER, G.J. 1970 An Introduction to Isozyme Techniques. New York: Academic Press. 186p.
CARVALHO, G.R. and HAUSER, L. 1994 Molecular genetics and the stock concept in fisheries.Reviews in Fish Biology and Fisheries, 4: 326í 350.
CHIARI, Y.; HYSENI, C.; FRITTS, F.T.; GLABERMAN, S.; MARQUEZ, C.; GIBBS, J.
2009 Morphometrics parallel genetics in a newly discovered and endangered taxon of Galápagos tortoise. PLoS ONE, 4(7): e6272.doi:10.1371/journal.pone.0006272.
CHUNG, M.Y. and CHUNG, M.G. 2012 A review of the use of genetic markers in orchid systematics with emphasis on allozymes. Biochemical Systematics and Ecology, 41: 62í 73
CRAWLEY, M.J. 2007 The R Book. West Sussex: Wiley& Sons. 942p.
DALL, W.; HILL, B.J.; ROTHLISBERG, P.C.;STAPLES, D.J. 1990 The biology of the penaeidae. Advances in Marine Biology, 27. London:Academic Press. 489p.
DUMONT, L.F.C.; HWANG, G.L.; MACLEAN, N.2009 The mtDNA control region of the barbaruça shrimp Artemesia longinaris (Decapoda:Penaeidae) and its potential use as a marker for population analysis. Atlí¢ntica, 31(2): 199-207.
FRANCISCO A.K. 2009 Caracterização genética populacional do camarão marinho Xiphopenaeus kroyeri no litoral sudeste-sul do Brasil. São Carlos. 100p. (Dissertação de mestrado. Universidade Federal de São Carlos). Available at:
http://www.ppggev.ufscar.br/downloads/teses-e-dissertacoes/
FRANCISCO A.K.; PINHEIRO, A.P.; SILVA, T.B.;GALETTI, P.M. 2009 Isolation and
characterization of microsatellites in three overexploited penaeid shrimp species along the Brazilian coastline. Conservation Genetics, 10:563í 566.
FRANCOY, T.M. and FONSECA, V.L.I. 2010 A morfometria geométrica de asas e a identificação automática das espécies de abelhas. Oecologia Australis, 14(1): 317-321.
FREITAS, P.D.; JESUS, C.M.; GALETTI, P.M. 2007 Isolation and characterization of new
microsatellite loci in the Pacific white shrimp Litopenaeus vannamei and cross-species amplification in other penaeid species. Molecular Ecology Notes, 7: 324í 326.
GUSMÃO, J. and SOLÉ-CAVA, A.M. 2002 Um sistema de diagnóstico molecular para a
identificação de espécies comerciais de camarões marinhos brasileiros. In: PRIMER CONGRESO IBEROAMERICANO VIRTUAL DEACUICULTURA. (http://www.civa2002.org).Zaragosa, pp. 754-764.
GUSMÃO, J.; LAZOSKI, C.; SOLÉ-CAVA, A.M.2000 A new species of Penaeus (Crustacea:
Penaeidae) revealed by allozyme and cytochrome oxidase I analyses. Marine Biology,
137: 435-446.
GUSMÃO, J.; LAZOSKI, C.; SOLÉ-CAVA, A.M. 2005 Population genetic structure of Brazilian shrimp species (Farfantepenaeus sp., F. brasiliensis, F.paulensis and Litopenaeus schmitti: Decapoda:Penaeidae). Genetics and Molecular Biology, 28:
165-171.
GUSMÃO, J.; LAZOSKI, C.; MONTEIRO, F.; SOLÉCAVA, A.M. 2006 Cryptic species and
population structuring of the Atlantic and Pacific seabob shrimp species, Xiphopenaeus kroyeri and X. riveti. Marine Biology, 149: 491í 502.
HUNTER R.; WEBB M.S.; ILIFFE, T.M.; BREMER, J.R.A. 2008 Phylogeny and historical
biogeography of the cave-adapted shrimp genus Typhlatya (Atyidae) in the Caribbean Sea and western Atlantic. Journal of Biogeography, 35: 65í 75.
KAPUSCINSKI, A.R. and MILLER, L.M. 2007 Genetic Guidelines for Fisheries Management. Duluth:Minnesota Sea Grant. 116p.
KIMURA, M. 1980 A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences.Journal of Molecular Evolution, 16: 111-120.
LAVERY, S.; CHAN, T.Y.; TAM, Y.K.; CHU, K.H.2004 Phylogenetic relationships and
evolutionary history of the shrimp genus Penaeus s.l. derived from mitochondrial DNA. Molecular Phylogenetics and Evolution, 31: 39-49.
MADERBACHER, M.; BAUER, C.; HERLER, J.; POSTL, L.; MAKASA, L.; STURMBAUER, C.
2008 Assessment of traditional versus geometric morphometrics for discriminating populations of the Tropheus moorii species complex (Teleostei:Cichlidae), a Lake Tanganyika model for allopatric speciation. Journal of Zoological Systematics and Evolutionary Research, 46: 153í 161.
MAGGIONI, D.E. 1996 Caracterização de algumas espécies do gênero Penaeus do litoral brasileiro através de eletroenfoque. Nauplius, 4: 129-137.
MAGGIONI, R.; ROGERS, A.D.; MACLEAN N.;D'INCAO F. 2001 Molecular phylogeny of
western Atlantic Farfantepenaeus and Litopenaeus shrimp based on mitochondrial 16S partial sequences. Molecular Phylogenetics and Evolution,18: 66-73.
MEIRMANS, P.G. and HEDRICK, P.W. 2011 Assessing population structure: FST and related measures. Molecular Ecology Resources, 11: 5í 18.
MURPHY, R.W.; SITES, J.W.; BUTH, D.G.; HAUFLER, C.H. 1990 Proteins I: isozyme
electrophoresis. In: HILLIS, D.M. and MORITZ, C. Molecular systematics. Sunderland: Sinauer Assoc. p. 45-126.
MUSTAFA, S. 1999 Genetics in sustainable fisheries management. Malden: Blackwell Science. 240p.
NAHAVANDI, R.; HAFEZAMINI, P.; MOEINI, H.;JAHROMI, M.Z.; SHAMSUDIN, M.N. 2011
Population of bottleneck and microsatellite: An Analysis Based on genetic diversity of Wild Tiger Shrimp Penaeus monodon (Fabricius) in Malaysia. African Journal of Biotechnology, 10(74):16715-16719.
OVENDEN, J.R. 1990 Mitochondrial DNA and marine stock assessment: a review. Australian Journal of Marine and Freshwater Research, 41: 835-853.
PÉREZ-FARFANTE, I. and KENSLEY, B.F. 1997 Penaeoid and Sergestoid shrimps and prawns of the world. Keys and diagnoses for the families and genera. Memoirs du Museum d'Histoire Naturelle, 175: 1-233.
QUAN, J.; ZHUANG, Z.; DENG, J.; DAI, J. 2004 Phylogenetic relationships of 12 Penaeoidea shrimp species deduced from mitochondrial DNA sequences. Biochemical Genetics, 42: 331-345.
ROHLF, F.J. and MARCUS, L.F. 1993 A revolution in morphometrics. Trends in Ecology and Evolution,8: 129-132.
RUMPUNEN, K. and BARTISH, I.V. 2002 Comparison of differentiation estimates based on morphometric and molecular data, exemplified by various leaf shape descriptors and RAPDs in the genus Chenomeles (Rosaceae). Taxon, 51(1): 69-82.
SANTOS, M.C.F. and IVO, C.T.C. 2000 Pesca,biologia e diní¢mica populacional do camarão Xiphopenaeus kroyeri (Heller,1862) (Crustacea, Decapoda, Penaeidae) capturado em frente ao município de Caravelas (Bahia-Brasil).BoletimTécnico CEPENE, 8: 131-164.
SCHLí–TTERER, C. 2004 The evolution of molecular markers - just a matter of fashion? Nature Reviews/Genetics, 5: 63-69.
SHAW, C.R. and PRASAD, R. 1970 Starch gel electrophoresis of enzymes - A compilation of recipes. Biochemical Genetics, 4(2): 297-320.
SILVA, D.M.; CRUZ, A.D.; BASTOS, R.P.; TELLES,M.P.C.; DINIZ-FILHO, J.A.F. 2008
Morphometric and genetic differentiation among populations of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from central Brazil. Iheringia, série Zoologia, 98(4): 493-500.
SMITH, S.I. 1869 Notice of the Crustacea collected by prof. C.F.Hartt on the coast of Brazil in 1867. Transactions of the Connecticut Academy of Arts and Science, 2(1): 1-41.
SPREITZER, M.L.; MAUTNER, S.; MAKASA, L.; STURMBAUER,C. 2012 Genetic and
Morphological population differentiation in the rock-dwelling and specialized shrimp-feeding cichlid fish species Altolamprologus compressiceps from Lake Tanganyika, East Africa. Hydrobiologia, 682: 143í 154.
THORPE, J.P.; SOLÉ-CAVA, A.M.; WATTS, P.C. 2000 Exploited marine invertebrates: genetics and fisheries. Hydrobiologia, 420(1): 165-184.
VOLOCH, C.M. and SOLÉ-CAVA, A.M. 2005 Genetic structure of the sea-bob shrimp
(Xiphopenaeus kroyeri Heller, 1862; Decapoda, Penaeidae) along the Brazilian southeastern coast. Genetics and Molecular Biology, São Paulo,28(2): 254-257.
WARD, R.D. 2000 Genetics in fisheries management. Hydrobiologia, 420(1): 191-201.
WEBER, L.; CONCEIÇÃO, M.L.; RUFFINO, M.L.;LEVY, J.A 1993 Population genetics of the shrimp Artemesia longinaris (Crustacea, Penaeidae) on the south-west Atlantic coast. Comparative Biochemistry and Physiology, 106(4): 1015-1020.
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